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101.
《Process Biochemistry》2014,49(1):61-68
Cloning, over-expression, characterization and structural and functional analysis of two alkaline proteases from the newly isolated haloalkaliphilic bacteria: Oceanobacillus iheyensis O.M.A18 and Haloalkaliphilic bacterium O.M.E12 were carried out. The cloned protease genes were over-expressed in Escherichia coli within 6 h of the IPTG induction. The protease genes were sequenced and the sequence submitted to the GenBank with the accession numbers, HM219179 and HM219182. The recombinant proteases were active in the range of pH 8–11 and temperature 30–50 °C. The amino acid sequences of the alkaline proteases displayed hydrophobic character and stable configurations. The amino acids Asp 141, His 171 and Ser 324 formed the catalytic triad, while Ile, Leu and Ser were other amino acid moieties present in the active site. The characteristics of the recombinant proteases were compared and found to be similar to their native counterparts. On the basis of the in-silico analysis and inhibitor studies, the enzymes were confirmed as serine proteases. The study hold significance as only limited enzymes from the haloalkaliphilic bacteria have been cloned, sequenced and analyzed for the structure and function analysis. 相似文献
102.
《Biocatalysis and Biotransformation》2013,31(1-4):1-30
Peptides, and oligosaccharides and glycosides, can be synthesised by making use of the ‘reverse hydrolytic activity’ of proteases and glycosidases respectively. In applying these enzymes to the practical synthesis of these classes of compound, several factors need to be considered, namely the need to shift the rate-determining step through the use of activated substrates, the need to minimise competing hydrolysis of these and the need to minimise hydrolysis of the products. In spite of these problems, the enzymatic methods have many attractive features, not least amongst which is the absolute control of stereochemistry in acyl transfer and glycosyl transfer respectively. 相似文献
103.
生态系统服务簇空间演变轨迹及其社会-生态驱动的地理探测——以大连市为例 总被引:1,自引:0,他引:1
生态系统服务簇是多种生态系统服务的组合,明晰生态系统服务簇及其自然-社会经济驱动因素,对生态系统服务内部相互依赖机制识别、实现多种生态系统服务间良性互动具有重要意义。目前生态系统服务簇的识别已得到广泛应用,但对多种生态系统服务之间交互作用的动态过程与影响机理的认识还不够深刻。针对目前多种生态系统服务间交互作用动态演化分析及其社会-生态驱动机理研究不足的现状,以我国北方沿海重要中心城市——大连市为例,选取食物供给、水源涵养、固碳释氧、土壤保持、生境质量和景观美学6种关键服务。采用Spearman相关性分析方法探究生态系统服务权衡与协同关系,借助自组织网络方法识别生态系统服务簇,进一步分析多种生态系统服务间交互作用的时空分异特征,运用地理探测器探究其空间分异影响因素。结果表明:(1)食物供给与土壤保持存在极显著的权衡关系■,土壤保持与景观美学存在极显著的协同关系■。(2)2005—2015年大连市生态保育簇空间格局较稳定,水源涵养簇、食物供给簇与服务枯竭簇之间轨迹变化明显,城市扩张与服务枯竭簇演变具有一致性。(3)高程、归一化植被指数是影响生态系统服务簇空间分布的关键自然因素,而土地利用强... 相似文献
104.
《DNA Repair》2017
Eukaryotic genomes are duplicated by a complex machinery, utilizing high fidelity replicative B-family DNA polymerases (pols) α, δ and ε. Specialized error-prone pol ζ, the fourth B-family member, is recruited when DNA synthesis by the accurate trio is impeded by replication stress or DNA damage. The damage tolerance mechanism dependent on pol ζ prevents DNA/genome instability and cell death at the expense of increased mutation rates. The pol switches occurring during this specialized replication are not fully understood. The loss of pol ζ results in the absence of induced mutagenesis and suppression of spontaneous mutagenesis. Disruption of the Fe-S cluster motif that abolish the interaction of the C-terminal domain (CTD) of the catalytic subunit of pol ζ with its accessory subunits, which are shared with pol δ, leads to a similar defect in induced mutagenesis. Intriguingly, the pol3-13 mutation that affects the Fe-S cluster in the CTD of the catalytic subunit of pol δ also leads to defective induced mutagenesis, suggesting the possibility that Fe-S clusters are essential for the pol switches during replication of damaged DNA. We confirmed that yeast strains with the pol3-13 mutation are UV-sensitive and defective in UV-induced mutagenesis. However, they have increased spontaneous mutation rates. We found that this increase is dependent on functional pol ζ. In the pol3-13 mutant strain with defective pol δ, there is a sharp increase in transversions and complex mutations, which require functional pol ζ, and an increase in the occurrence of large deletions, whose size is controlled by pol ζ. Therefore, the pol3-13 mutation abrogates pol ζ-dependent induced mutagenesis, but allows for pol ζ recruitment for the generation of spontaneous mutations and prevention of larger deletions. These results reveal differential control of the two major types of pol ζ-dependent mutagenesis by the Fe-S cluster present in replicative pol δ. 相似文献
105.
The glands of Tamarix aphylla: a system for salt recretion or for carbon concentration? 总被引:4,自引:0,他引:4
Yoav Waisel 《Physiologia plantarum》1991,83(3):506-510
During periods of high atmospheric humidity, twigs of Tamarix aphylla (L.) Karst. become covered by an alkaline solution. The pH of that solution fluctuates between 8.0 – 8.5 in the dark and 10.5 during the light hours. Such a solution, produced by the glands, constitutes an efficient trap for atmospheric CO2 . Upon the periodic drop in pH, much of the preabsorbed carbon may gradually be released from the solution. This enriches the immediate surroundings of the twigs with CO2 for prolonged periods of time. The expected concentrations of CO2 , at the boundary layer between the atmosphere and the surfaces of the twigs, are over 1 000 ppm. As net photosynthesis of T. aphylla reaches maximal rates only at CO2 concentrations of above 500 ppm, the plants may benefit from this extra source of carbon and may exploit it for maximal assimilation during the early morning hours. Thus, the "salt glands'of Tamarix , which are liable for the production of the alkaline recretum, may serve a triple purpose: (a) removal of excess salts out of the twigs, (b) provision of a cover of hygroscopic solutes that moistens the twigs and shortens the duration of transpiration, and (c) providing the plants with an environment enriched in CO2 . 相似文献
106.
107.
Several aspects of a diel vertical migration (DVM) of adultEudiaptomus gracilis in Lake Maarsseveen (The Netherlands) are described. The period of DVM lasted from the end of May until the middle of August. On May 21, 1989, the population was found divided into a deep dwelling part and a part in the upper five meter. Large shoals of juvenile perch were observed in the open water for the first time. On June 7, the whole population was down below 10 m and concentrated in a zone of high chlorphyll-a concentrations. One week later, a regular DVM was performed. The amplitude of this migration gradually decreased towards the end of the migration period. The ascent in the evening and the descent in the morning took place after sunset and before sunrise, respectively. The movements coincided with high relative changes in light intensity. Population size increased rapidly during the period of DVM but decreased again before the end of this period. 相似文献
108.
N-stable isotope analysis of macroalgae has become a popular method for the monitoring of nitrogen pollution in aquatic ecosystems. Basing on changes in their δ15N, macroalgae have been successfully used as biological traps to intercept nitrogen inputs. As different nitrogen sources differ in their isotopic signature, this technique provides useful information on the origin of pollutants and their extension in the water body. However, isotopic fractionation potentially resulting from microbial nitrogen processing, and indirect isotopic variations due to effects of physicochemical conditions on algal nutrient uptake and metabolism, may affect anthropogenic N isotopic values during transportation and assimilation. This in turn can affect the observed isotopic signature in the algal tissue, inducing isotopic variations not related to the origin of assimilated nitrogen, representing a “background noise” in isotope-based water pollution studies.In this study, we focused on three neighbouring coastal lakes (Caprolace, Fogliano and Sabaudia lakes) located south of Rome (Italy). Lakes were characterized by differences in terms of anthropogenic pressure (i.e. urbanization, cultivated crops, livestock grazing) and potential “background noise” levels (i.e. nutrient concentration, pH, microbial concentration). Our aim was to assess nitrogen isotopic variations in fragments of Ulva lactuca specimens after 48 h of submersion to identify and locate the origins of nitrogen pollutants affecting each lake. δ15N were obtained for replicated specimens of U. lactuca spatially distributed to cover the entire surface of each lake, previously collected from a benchmark, unpolluted site. In order to reduce the environmental background noise on isotopic observations, a Bayesian hierarchical model relating isotopic variation to environmental covariates and random spatial effects was used to describe and understand the distribution of isotopic signals in each lake.Our procedure (i) allowed to remove background noise and confounding effects from the observed isotopic signals; (ii) allowed to detect “hidden” pollution sources that would not be detected when not accounting for the confounding effect of environmental background noise; (iii) produced maps of the three lakes providing a clear representation of the isotopic signal variation even where background noise was high. Maps were useful to locate nitrogen pollution sources, identify the origin of the dissolved nitrogen and quantify the extent of pollutants, showing localized organic pollution impacting Sabaudia and Fogliano, but not Caprolace. This method provided a clear characterization of both intra- and inter-lake anthropogenic pressure gradients, representing a powerful approach to the ecological indication and nitrogen pollution management in complex systems, as transitional waterbodies are. 相似文献
109.
A. S. Davydov 《Journal of biological physics》1991,18(2):111-125
The lifetime of Davydov solitons in a one-dimensional system is studied theoretically. The process of thermalization and the properties of solitons at finite temperature are investigated and the processes of soliton creation and disintegration are discussed. 相似文献
110.
Long-term assessments of species assemblages are valuable tools for detecting species ecological preferences and their dispersal
tracks, as well as for assessing the possible effects of alien species on native communities. Here we report a 50-year-long
study on population dynamics of the four species of land flatworms (Platyhelminthes, Tricladida, Terricola) that have colonized
or become extinct in a 70-year-old Atlantic Forest regrowth remnant through the period 1955–2006. On the one hand, the two
initially most abundant species, which are native to the study site, Notogynaphallia
ernesti and Geoplana multicolor have declined over decades and at present do not exist in the forest remnant. The extinction of these species is most likely
related with their preference for open vegetation areas, which presently do not exist in the forest remnant. On the other
hand, the neotropical Geoplaninae 1 and the exotic Endeavouria septemlineata were detected in the forest only very recently. The long-term study allowed us to conclude that Geoplaninae 1 was introduced
into the study area, although it is only known from the study site. Endeavouria septemlineata, an active predator of the exotic giant African snail, is originally known from Hawaii. This land flatworm species was observed
repeatedly in Brazilian anthropogenic areas, and this is the first report of the species in relatively well preserved native
forest, which may be evidence of an ongoing adaptive process. Monitoring of its geographic spread and its ecological role
would be a good practice for preventing potential damaging effects, since it also feeds on native mollusk fauna, as we observed
in lab conditions.
Júlio Pedroni: Granted by CNPQ–Brazil. 相似文献